Training

Title (+link)	GTN topic name	Last updated	EDAM topic(s)	EDAM operation(s)	Resources available
Friends Don't Let Friends Make Bad Graphs	Visualisation	2023-11-20			Slides Video
Visualisations in Galaxy	Visualisation	2023-01-12			Slides
Visualisation with Circos	Visualisation	2024-10-15		Sequence visualisation	Slides Video Hands-on
Ploting a Microbial Genome with Circos	Visualisation	2024-09-17		Sequence visualisation	Hands-on
Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons	Variant Analysis	2024-09-27		Database search Genetic variation analysis Service discovery	Hands-on
Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs)	Variant Analysis	2024-09-27		Database search Genetic variation analysis Service discovery	Hands-on
Exome sequencing data analysis for diagnosing a genetic disease	Variant Analysis	2025-04-08		Genetic variation analysis Sequence alignment Validation Genome indexing Statistical calculation Sequence composition calculation Sequence analysis Generation Read mapping Variant calling Sequencing quality control	Hands-on
Mapping and molecular identification of phenotype-causing mutations	Variant Analysis	2023-11-09			Hands-on
Identification of somatic and germline variants from tumor and normal sample pairs	Variant Analysis	2025-03-20		Visualisation Sequence alignment analysis Data handling Sequence alignment Validation Genome indexing Statistical calculation Sequence composition calculation Generation Read mapping Variant calling Sequencing quality control	Hands-on
Trio Analysis using Synthetic Datasets from RD-Connect GPAP	Variant Analysis	2024-09-17		Genetic variation analysis Sequence analysis	Video Hands-on
Calling variants in diploid systems	Variant Analysis	2025-04-28		Statistical calculation Variant calling Sequence analysis Genetic variation analysis	Hands-on
Somatic Variant Discovery from WES Data Using Control-FREEC	Variant Analysis	2025-03-20		Visualisation Sequence visualisation Sequence alignment Validation Genome indexing Statistical calculation Sequence composition calculation Variant calling Generation Read mapping Copy number estimation Genome alignment Sequencing quality control	Hands-on
Calling variants in non-diploid systems	Variant Analysis	2024-03-15	Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Genetic variation	Sequence alignment analysis Data handling Formatting Sequence alignment Genome indexing Statistical calculation Sequence composition calculation Generation Read mapping Variant calling Sequencing quality control	Hands-on
Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates	Variant Analysis	2025-02-24		Data handling Sequence alignment Genome indexing Sequence trimming Read pre-processing Generation Read mapping Primer removal Visualisation	Hands-on
Calling very rare variants	Variant Analysis	2024-12-09		Sequence alignment Genome indexing Statistical calculation Sequence composition calculation Generation Read mapping Variant calling Sequencing quality control	Hands-on
Introduction to Variant analysis	Variant Analysis	2023-03-05			Slides
De novo transcriptome reconstruction with RNA-Seq	Transcriptomics	2024-06-14		RNA-Seq quantification Sequence alignment Statistical calculation Differential gene expression analysis Read summarisation Sequence composition calculation RNA-Seq analysis Sequence annotation Sequencing quality control Transcriptome assembly	Video Hands-on
Pathway analysis with the MINERVA Platform	Transcriptomics	2024-07-26		Gene functional annotation RNA-Seq quantification Data handling Sequence alignment Validation Statistical calculation Sequence trimming Sequence composition calculation Read summarisation Read pre-processing RNA-Seq analysis Primer removal Annotation Sequencing quality control	Hands-on
Reference-based RNA-Seq data analysis	Transcriptomics	2025-04-08		RNA-Seq quantification Data handling Formatting Sequence alignment Validation Enrichment analysis Differential gene expression analysis Sequencing quality control Gene functional annotation Sequence trimming Read summarisation Read pre-processing Read mapping RNA-Seq analysis Primer removal Exonic splicing enhancer prediction Pathway or network analysis Visualisation Pathway or network visualisation	Video Hands-on
Visualization of RNA-Seq results with Volcano Plot in R	Transcriptomics	2024-06-14			Video Hands-on
Reference-based RNAseq data analysis (long)	Transcriptomics	2023-02-17			Hands-on
RNA Seq Counts to Viz in R	Transcriptomics	2024-10-15			Video Hands-on
RNA-seq Alignment with STAR	Transcriptomics	2023-11-09			Hands-on
Introduction to Transcriptomics	Transcriptomics	2025-04-08			Slides Video
Visualization of RNA-Seq results with CummeRbund	Transcriptomics	2023-11-09			Slides Hands-on
RNA-Seq analysis with AskOmics Interactive Tool	Transcriptomics	2023-11-09			Slides Hands-on
Visualization of RNA-Seq results with heatmap2	Transcriptomics	2023-11-09			Hands-on
Differential abundance testing of small RNAs	Transcriptomics	2023-11-09		RNA-Seq quantification Sequence alignment Statistical calculation Differential gene expression analysis Sequence trimming Sequence composition calculation Read pre-processing RNA-Seq analysis Primer removal Gene expression analysis Sequencing quality control	Hands-on
CLIP-Seq data analysis from pre-processing to motif detection	Transcriptomics	2023-11-09		Primer removal Sequence alignment Statistical calculation Mapping Sequence trimming Sequence composition calculation Sequencing quality control Read pre-processing	Hands-on
De novo transcriptome assembly, annotation, and differential expression analysis	Transcriptomics	2023-11-09		Gene functional annotation Validation Statistical calculation Sequence composition calculation de Novo sequencing De-novo assembly Coding region prediction Sequencing quality control Transcriptome assembly	Hands-on
RNA-RNA interactome data analysis	Transcriptomics	2023-11-09		Primer removal Statistical calculation Sequence trimming Sequence composition calculation Sequencing quality control Read pre-processing	Hands-on
Small Non-coding RNA Clustering using BlockClust	Transcriptomics	2023-11-09			Hands-on
Visualization of RNA-Seq results with Volcano Plot	Transcriptomics	2025-04-17			Video Hands-on
Genome-wide alternative splicing analysis	Transcriptomics	2025-03-28		Visualisation Data handling Formatting Sequence contamination filtering Validation Sequence alignment Statistical calculation Sequence comparison Protein sequence analysis Sequence composition calculation Sequence analysis Sequence assembly validation RNA-Seq analysis Sequence annotation De-novo assembly Sequencing quality control Transcriptome assembly	Slides Hands-on
Network analysis with Heinz	Transcriptomics	2024-01-15		Pathway or network analysis Differential gene expression analysis RNA-Seq analysis	Slides Hands-on
3: RNA-seq genes to pathways	Transcriptomics	2023-11-09		Gene functional annotation Gene set testing Gene-set enrichment analysis	Hands-on
GO Enrichment Analysis	Transcriptomics	2024-03-05		Gene-set enrichment analysis	Hands-on
2: RNA-seq counts to genes	Transcriptomics	2024-04-10		Annotation RNA-Seq analysis	Hands-on
1: RNA-Seq reads to counts	Transcriptomics	2024-08-09		RNA-Seq quantification Data handling Formatting Sequence alignment Validation Statistical calculation Read summarisation Sequence trimming Sequence composition calculation Primer removal Sequencing quality control Read pre-processing	Hands-on
Hybrid training	Teaching and Hosting Galaxy training	2024-06-25			Hands-on
Organizing a workshop	Teaching and Hosting Galaxy training	2023-11-09			Hands-on
Teaching online	Teaching and Hosting Galaxy training	2023-10-23			Hands-on
Running a workshop as instructor	Teaching and Hosting Galaxy training	2025-04-08			Hands-on
Asynchronous training	Teaching and Hosting Galaxy training	2023-11-02			Hands-on
Live Coding is a Skill	Teaching and Hosting Galaxy training	2023-11-09			Hands-on
Galaxy Admin Training	Teaching and Hosting Galaxy training	2024-09-17			Hands-on
Course Builder	Teaching and Hosting Galaxy training	2023-11-02			Hands-on
Teaching experiences	Teaching and Hosting Galaxy training	2022-09-23			Hands-on
Training Infrastructure as a Service	Teaching and Hosting Galaxy training	2023-12-20			Hands-on
Set up a Galaxy for Training	Teaching and Hosting Galaxy training	2023-11-09			Hands-on
Overview of the Galaxy Training Material for Instructors	Teaching and Hosting Galaxy training	2024-08-08			Slides Video
Workshop Kickoff	Teaching and Hosting Galaxy training	2024-02-20			Slides
Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools	Synthetic Biology	2024-06-14			Video Hands-on
Evaluating and ranking a set of pathways based on multiple metrics	Synthetic Biology	2024-06-14			Video Hands-on
Designing plasmids encoding predicted pathways by using the BASIC assembly method	Synthetic Biology	2024-06-14			Video Hands-on
Optimizing DNA Sequences for Biological Functions using a DNA LLM	Statistics and machine learning	2025-04-17			Hands-on
Generating Artificial Yeast DNA Sequences using a DNA LLM	Statistics and machine learning	2025-04-25			Hands-on
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM	Statistics and machine learning	2025-04-25			Hands-on
Fine-tuning a LLM for DNA Sequence Classification	Statistics and machine learning	2025-04-25			Hands-on
Supervised Learning with Hyperdimensional Computing	Statistics and machine learning	2023-11-09			Hands-on
Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences	Statistics and machine learning	2025-04-25			Hands-on
Introduction to Machine Learning using R	Statistics and machine learning	2024-10-15			Video Hands-on
Fine tune large protein model (ProtTrans) using HuggingFace	Statistics and machine learning	2025-04-08			Slides Video Hands-on
Interval-Wise Testing for omics data	Statistics and machine learning	2023-11-09		Differentially-methylated region identification Differential gene expression analysis Peak calling Comparison Genome annotation	Hands-on
Classification in Machine Learning	Statistics and machine learning	2025-04-08			Slides Video Hands-on
Basics of machine learning	Statistics and machine learning	2025-04-08			Slides Video Hands-on
Train and Test a Deep learning image classifier with Galaxy-Ludwig	Statistics and machine learning	2024-12-11			Hands-on
Image classification in Galaxy with fruit 360 dataset	Statistics and machine learning	2024-07-09			Slides Video Hands-on
Deep Learning (Part 2) - Recurrent neural networks (RNN)	Statistics and machine learning	2024-06-14			Slides Video Hands-on
Regression in Machine Learning	Statistics and machine learning	2025-04-08			Slides Video Hands-on
Introduction to deep learning	Statistics and machine learning	2025-04-08			Hands-on
Deep Learning (Part 3) - Convolutional neural networks (CNN)	Statistics and machine learning	2024-10-10			Slides Video Hands-on
Building the LORIS LLR6 PanCancer Model Using PyCaret	Statistics and machine learning	2024-12-13			Hands-on
Deep Learning (Part 1) - Feedforward neural networks (FNN)	Statistics and machine learning	2024-06-14			Slides Video Hands-on
Text-mining with the SimText toolset	Statistics and machine learning	2024-03-05			Hands-on
Text-Mining Differences in Chinese Newspaper Articles	Statistics and machine learning	2025-04-23			Hands-on
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy	Statistics and machine learning	2025-04-08			Hands-on
Age prediction using machine learning	Statistics and machine learning	2025-04-08			Hands-on
PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis	Statistics and machine learning	2023-11-09			Hands-on
Clustering in Machine Learning	Statistics and machine learning	2025-04-08		Visualisation	Hands-on
Machine learning: classification and regression	Statistics and machine learning	2025-04-08			Hands-on
Automated Cell Annotation	Single Cell	2025-02-27			Slides
Trajectory analysis	Single Cell	2025-02-13			Slides
Bulk matrix to ESet \| Creating the bulk RNA-seq dataset for deconvolution	Single Cell	2024-02-13		Annotation	Hands-on
Inferring single cell trajectories with Monocle3	Single Cell	2025-04-23			Video Hands-on
Inferring single cell trajectories with Monocle3 (R)	Single Cell	2025-03-11			Hands-on
Single-cell Formats and Resources	Single Cell	2025-02-13			Slides Video
Matrix Exchange Format to ESet \| Creating a single-cell RNA-seq reference dataset for deconvolution	Single Cell	2024-02-13		Annotation	Hands-on
Inferring single cell trajectories with Scanpy	Single Cell	2025-03-11			Hands-on
Inferring single cell trajectories with Scanpy (Python)	Single Cell	2025-03-11			Video Hands-on
Plates, Batches, and Barcodes	Single Cell	2025-02-13			Slides Video
Clustering 3K PBMCs with Seurat	Single Cell	2025-04-29			Video Hands-on
Multi-sample batch correction with Harmony and SnapATAC2	Single Cell	2025-02-28		Dimensionality reduction Essential dynamics Gene expression profiling	Hands-on
Converting NCBI Data to the AnnData Format	Single Cell	2025-03-11			Video Hands-on
Evaluating Reference Data for Bulk RNA Deconvolution	Single Cell	2025-03-11		Annotation Visualisation	Hands-on
Filter, plot and explore single-cell RNA-seq data with Scanpy	Single Cell	2025-04-23		Differential gene expression analysis	Video Hands-on
Filter, plot, and explore single cell RNA-seq data with Seurat	Single Cell	2025-03-11			Hands-on
Scanpy Parameter Iterator	Single Cell	2025-02-13			Hands-on
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)	Single Cell	2025-03-11			Video Hands-on
Downstream Single-cell RNA analysis with RaceID	Single Cell	2025-02-14		Expression profile clustering Molecular dynamics Expression analysis	Hands-on
Removing the effects of the cell cycle	Single Cell	2025-03-11		Differential gene expression analysis	Hands-on
Filter, plot, and explore single cell RNA-seq data with Seurat (R)	Single Cell	2025-03-11			Hands-on
Combining single cell datasets after pre-processing	Single Cell	2025-04-22			Video Hands-on
Comparing inferred cell compositions using MuSiC deconvolution	Single Cell	2025-02-13			Hands-on
Importing files from public atlases	Single Cell	2025-03-11			Video Hands-on
Clustering 3K PBMCs with Scanpy	Single Cell	2025-04-29		Differential gene expression analysis	Slides Video Hands-on
Understanding Barcodes	Single Cell	2025-02-14		Statistical calculation Sequence composition calculation Sequencing quality control	Video Hands-on
Single-cell ATAC-seq standard processing with SnapATAC2	Single Cell	2025-04-08		Essential dynamics Sequence alignment Genome indexing Differential gene expression analysis Dimensionality reduction Generation Read mapping Gene expression profiling	Hands-on
Generating a single cell matrix using Alevin and combining datasets (bash + R)	Single Cell	2025-04-22			Hands-on
An introduction to scRNA-seq data analysis	Single Cell	2025-02-13			Slides Video
Converting between common single cell data formats	Single Cell	2025-03-11		Loading Community profiling	Hands-on
Pre-processing of 10X Single-Cell RNA Datasets	Single Cell	2025-04-29		Sequence alignment Validation Community profiling Loading Sequencing quality control	Video Hands-on
GO Enrichment Analysis on Single-Cell RNA-Seq Data	Single Cell	2025-04-08		Gene-set enrichment analysis	Slides Hands-on
Pre-processing of 10X Single-Cell ATAC-seq Datasets	Single Cell	2025-02-13		Gene regulatory network analysis Sequence alignment Enrichment analysis Genome indexing Statistical calculation Differential gene expression analysis Sequence composition calculation Imputation Peak calling Generation Read mapping Mapping Sequencing quality control	Hands-on
Bulk RNA Deconvolution with MuSiC	Single Cell	2025-02-14			Video Hands-on
Pre-processing of Single-Cell RNA Data	Single Cell	2025-04-08		RNA-Seq quantification Sequence alignment analysis Data handling Sequence alignment Validation Read summarisation Sequencing quality control	Slides Hands-on
Single-cell quality control with scater	Single Cell	2025-02-14		Sequencing quality control Sequence visualisation Read pre-processing	Hands-on
Pseudobulk Analysis with Decoupler and EdgeR	Single Cell	2025-04-29		Differential gene expression analysis	Hands-on
Generating a single cell matrix using Alevin	Single Cell	2025-04-29		RNA-Seq quantification Sequence composition calculation Gene expression analysis	Video Hands-on
Mapping	Sequence analysis	2025-03-31	Mapping	Sequence alignment analysis Data handling Validation Statistical calculation Sequence trimming Sequence composition calculation Read pre-processing Read mapping Primer removal Sequencing quality control Genome visualisation	Slides Video Hands-on
Quality Control	Sequence analysis	2025-03-29		Validation Scatter plot plotting Statistical calculation Sequence trimming Sequence composition calculation Read pre-processing Box-Whisker plot plotting Primer removal Sequencing quality control	Slides Video Hands-on
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes	Sequence analysis	2025-03-20		Sequence alignment analysis Multiple sequence alignment Global alignment Sequence alignment Local alignment PCR primer design Sequence analysis	Hands-on
Quality and contamination control in bacterial isolate using Illumina MiSeq Data	Sequence analysis	2025-03-20	Whole genome sequencing Genomics Microbiology Microbial ecology	Visualisation Sequence contamination filtering Statistical calculation Read mapping Taxonomic classification Cross-assembly Sequencing quality control Expression analysis	Video Hands-on
Screening assembled genomes for contamination using NCBI FCS	Sequence analysis	2024-04-16		Sequence trimming Sequence assembly validation Sequence contamination filtering	Hands-on
Clean and manage Sanger sequences from raw files to aligned consensus	Sequence analysis	2024-03-05		Visualisation Data handling Sequence file editing DNA barcoding Sequence clustering Phylogenetic analysis Sequence read processing Taxonomic classification Demultiplexing Sequencing quality control	Hands-on
Label-free versus Labelled - How to Choose Your Quantitation Method	Proteomics	2025-04-08			Hands-on
Introduction to proteomics, protein identification, quantification and statistical modelling	Proteomics	2024-08-08			Slides Video
metaQuantome 2: Function	Proteomics	2024-03-15	Proteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics	Functional clustering Principal component visualisation Differential protein expression analysis Indexing Filtering Heat map generation Statistical inference Query and retrieval Quantification Visualisation	Hands-on
Proteogenomics 1: Database Creation	Proteomics	2024-08-09		Variant calling RNA-Seq analysis Sequence alignment Sequence annotation Statistical calculation Transcriptome assembly	Video Hands-on
Metaproteomics tutorial	Proteomics	2024-06-14	Proteomics Proteogenomics Biodiversity Taxonomy	Visualisation Prediction and recognition	Video Hands-on
DIA Analysis using OpenSwathWorkflow	Proteomics	2023-11-09		Formatting Filtering	Hands-on
EncyclopeDIA	Proteomics	2024-09-30		Formatting Filtering	Video Hands-on
Peptide and Protein ID using SearchGUI and PeptideShaker	Proteomics	2025-04-08			Hands-on
Proteogenomics 2: Database Search	Proteomics	2024-08-09		Conversion Peptide database search	Video Hands-on
Library Generation for DIA Analysis	Proteomics	2023-11-09		Principal component plotting Statistical calculation Imputation Heat map generation Clustering Standardisation and normalisation Visualisation Protein quantification	Hands-on
Biomarker candidate identification	Proteomics	2023-11-09			Hands-on
MaxQuant and MSstats for the analysis of label-free data	Proteomics	2024-09-03		Spectrum calculation Principal component plotting Statistical calculation Tag-based peptide identification Imputation Heat map generation Clustering Differential protein expression profiling Standardisation and normalisation Visualisation Protein quantification	Video Hands-on
metaQuantome 3: Taxonomy	Proteomics	2024-03-15	Proteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy	Functional clustering Principal component visualisation Differential protein expression analysis Indexing Filtering Heat map generation Statistical inference Query and retrieval Quantification Visualisation	Hands-on
Clinical Metaproteomics 3: Verification	Proteomics	2024-12-05			Video Hands-on
Clinical Metaproteomics 5: Data Interpretation	Proteomics	2024-10-12		Visualisation Prediction and recognition	Video Hands-on
Secretome Prediction	Proteomics	2025-04-08			Hands-on
Label-free data analysis using MaxQuant	Proteomics	2023-11-09		Spectrum calculation Principal component plotting Statistical calculation Tag-based peptide identification Imputation Heat map generation Clustering Differential protein expression profiling Standardisation and normalisation Visualisation Protein quantification	Hands-on
Neoantigen 5: Variant Annotation	Proteomics	2025-02-10			Hands-on
Protein FASTA Database Handling	Proteomics	2025-04-08	Proteomics		Hands-on
metaQuantome 1: Data creation	Proteomics	2024-03-14	Proteomics Proteogenomics Biodiversity Taxonomy	Prediction and recognition Formatting Filtering Visualisation Label-free quantification	Hands-on
Peptide Library Data Analysis	Proteomics	2023-11-09			Hands-on
Annotating a protein list identified by LC-MS/MS experiments	Proteomics	2024-06-14			Video Hands-on
Clinical Metaproteomics 1: Database-Generation	Proteomics	2025-04-07		Target-Decoy Expression analysis Tag-based peptide identification de Novo sequencing Protein identification	Video Hands-on
Detection and quantitation of N-termini (degradomics) via N-TAILS	Proteomics	2025-04-08	Proteomics		Hands-on
Neoantigen 3: Database merge and FragPipe discovery	Proteomics	2025-04-07			Hands-on
Neoantigen 4: PepQuery2 Verification	Proteomics	2025-04-01		Formatting Filtering	Hands-on
Multiomics data analysis using MultiGSEA	Proteomics	2025-03-11		Pathway analysis Gene-set enrichment analysis Aggregation	Hands-on
Neoantigen 1: Fusion-Database-Generation	Proteomics	2025-02-10		Sequence alignment	Hands-on
Clinical Metaproteomics 2: Discovery	Proteomics	2024-12-05		Formatting Filtering Principal component plotting Statistical calculation Imputation Heat map generation Clustering Standardisation and normalisation Visualisation Protein quantification	Video Hands-on
Peptide and Protein ID using OpenMS tools	Proteomics	2025-04-08		Formatting Filtering	Hands-on
Mass spectrometry imaging: Loading and exploring MSI data	Proteomics	2025-04-08	Proteomics		Hands-on
MaxQuant and MSstats for the analysis of TMT data	Proteomics	2025-01-08		Principal component plotting Statistical calculation Imputation Heat map generation Clustering Standardisation and normalisation Visualisation Protein quantification	Hands-on
Neoantigen 2: Non-Reference-Database-Generation	Proteomics	2025-03-21		Variant calling RNA-Seq analysis Sequence alignment Sequence annotation Statistical calculation Transcriptome assembly	Hands-on
Neoantigen 6: Predicting HLA Binding	Proteomics	2025-01-14		Read mapping Genetic variation analysis	Hands-on
Clinical Metaproteomics 4: Quantitation	Proteomics	2024-12-05		Principal component plotting Statistical calculation Imputation Heat map generation Clustering Standardisation and normalisation Visualisation Protein quantification	Video Hands-on
Proteogenomics 3: Novel peptide analysis	Proteomics	2024-08-09			Video Hands-on
Machine Learning Modeling of Anticancer Peptides	Proteomics	2023-11-09			Hands-on
Neoantigen 7: IEDB binding PepQuery Validated Neopeptides	Proteomics	2025-03-21			Hands-on
Single Cell Proteomics data analysis with bioconductor-scp	Proteomics	2025-02-10		Visualisation Expression analysis	Hands-on
Peptide and Protein Quantification via Stable Isotope Labelling (SIL)	Proteomics	2025-04-08			Hands-on
Statistical analysis of DIA data	Proteomics	2023-11-09		Tag-based peptide identification Spectrum calculation Differential protein expression profiling	Hands-on
Analysis of plant scRNA-Seq Data with Scanpy	Single Cell	2025-02-13		Differential gene expression analysis	Video Hands-on
NCBI BLAST+ against the MAdLand	Sequence analysis	2024-07-31		Sequence alignment analysis	Hands-on
Whole transcriptome analysis of Arabidopsis thaliana	Transcriptomics	2024-08-09		RNA-Seq quantification Validation Statistical calculation Differential gene expression analysis Sequence trimming Sequence composition calculation Read pre-processing RNA-Seq analysis Primer removal Gene expression analysis Sequencing quality control	Slides Video Hands-on
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants	Sequence analysis	2025-04-27		Phylogenetic inference (from molecular sequences) Multiple sequence alignment Phylogenetic analysis Sequence analysis Phylogenetic tree editing	Video Hands-on
Avian influenza viral strain analysis from gene segment sequencing data	Variant Analysis	2024-10-04		Data retrieval Sequence alignment analysis Data handling Sequence alignment Genome indexing Sequence contamination filtering Sequence file editing Sequence analysis Generation Read mapping Multiple sequence alignment Phylogenetic analysis Primer removal De-novo assembly Sequencing quality control	Hands-on
Pox virus genome analysis from tiled-amplicon sequencing data	Variant Analysis	2024-03-20		Sequence alignment analysis Global alignment Sequence alignment Genome indexing Local alignment Sequence contamination filtering Sequence analysis Generation Read mapping Multiple sequence alignment Primer removal Sequencing quality control	Hands-on
M. tuberculosis Variant Analysis	Variant Analysis	2024-07-26	Genomics Microbiology Sequence assembly Genetic variation Public health and epidemiology Infectious disease	Sequence alignment analysis Global alignment Phylogenetic tree generation Sequence alignment Local alignment Sequence contamination filtering Statistical calculation Validation Sequence composition calculation Sequence analysis Variant calling Taxonomic classification Phylogenetic tree visualisation Sequencing quality control Antimicrobial resistance prediction Genome visualisation	Video Hands-on
16S Microbial Analysis with mothur (short)	Microbiome	2024-06-14	Microbial ecology Taxonomy Sequence analysis Metabarcoding	Visualisation Phylogenetic tree generation DNA barcoding Sequence clustering Phylogenetic tree reconstruction Sequence read processing Phylogenetic tree analysis Phylogenetic analysis Taxonomic classification Sequencing quality control	Video Hands-on
16S Microbial Analysis with mothur (extended)	Microbiome	2024-03-14	Microbial ecology Taxonomy Sequence analysis Metabarcoding	Visualisation Phylogenetic tree generation DNA barcoding Sequence clustering Phylogenetic tree reconstruction Sequence read processing Phylogenetic tree analysis Phylogenetic analysis Taxonomic classification Sequencing quality control	Hands-on
QIIME 2 Cancer Microbiome Intervention	Microbiome	2024-03-14	Microbial ecology Taxonomy Sequence analysis Metabarcoding		Hands-on
Binning of metagenomic sequencing data	Microbiome	2024-09-12	Metagenomics Sequence assembly	Genome assembly Validation Statistical calculation Sequence composition calculation Sequence assembly validation Sequencing quality control	Video Hands-on
QIIME 2 Moving Pictures	Microbiome	2024-03-14	Microbial ecology Taxonomy Sequence analysis Metabarcoding		Hands-on
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition	Microbiome	2024-09-27	Metagenomics Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis	Sequence assembly visualisation Sequence alignment analysis Data handling Sequence contamination filtering Genome assembly Aggregation Validation Scatter plot plotting Sequence composition calculation Phylogenetic tree reconstruction Mapping assembly Variant calling Pairwise sequence alignment Cross-assembly Mapping Sequencing quality control Antimicrobial resistance prediction Phylogenetic tree generation Sequence assembly Statistical calculation Box-Whisker plot plotting Phylogenetic tree generation (from molecular sequences) Multiple sequence alignment Phylogenetic tree analysis Multilocus sequence typing Taxonomic classification De-novo assembly Base-calling Phylogenetic tree generation (maximum likelihood and Bayesian methods) Visualisation	Video Hands-on
Taxonomic Profiling and Visualization of Metagenomic Data	Microbiome	2025-04-24	Metagenomics Microbial ecology Taxonomy Sequence analysis	Aggregation Statistical calculation Taxonomic classification Visualisation Genome annotation	Video Hands-on
Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data	Microbiome	2025-01-07	Genomics Microbiology Sequence analysis Mobile genetic elements	Visualisation Pairwise sequence alignment	Hands-on
Clinical Metaproteomics 3: Verification	Microbiome	2025-05-04			Video Hands-on
Clinical Metaproteomics 5: Data Interpretation	Microbiome	2025-05-04		Visualisation Prediction and recognition	Video Hands-on
16S Microbial analysis with Nanopore data	Microbiome	2024-07-31	Microbial ecology Taxonomy Sequence analysis Metabarcoding	Visualisation Sequence contamination filtering Validation Taxonomic classification Statistical calculation Sequence composition calculation Sequencing quality control	Hands-on
Calculating α and β diversity from microbiome taxonomic data	Microbiome	2024-09-24		Visualisation Aggregation	Video Hands-on
Antibiotic resistance detection	Microbiome	2024-06-14	Metagenomic sequencing Public health and epidemiology Metagenomics Microbiology Infectious disease Sequence analysis Antimicrobial resistance	Sequence assembly visualisation Genome assembly Scatter plot plotting Aggregation Sequence analysis Mapping assembly Box-Whisker plot plotting Pairwise sequence alignment De-novo assembly Antimicrobial resistance prediction	Video Hands-on
Building an amplicon sequence variant (ASV) table from 16S data using DADA2	Microbiome	2025-04-22	Microbial ecology Taxonomy Sequence analysis Metabarcoding	Variant calling Analysis DNA barcoding Deposition Visualisation	Video Hands-on
Clinical Metaproteomics 1: Database-Generation	Microbiome	2025-05-04		Target-Decoy Expression analysis Tag-based peptide identification de Novo sequencing Protein identification	Video Hands-on
Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2	Microbiome	2024-09-30		DNA barcoding Sequence feature detection	Hands-on
Identification of the micro-organisms in a beer using Nanopore sequencing	Microbiome	2024-11-29	Metagenomics Microbial ecology Taxonomy Sequence analysis	Visualisation Taxonomic classification Sequence contamination filtering Aggregation Statistical calculation Sequence composition calculation Sequencing quality control	Video Hands-on
Clinical Metaproteomics 2: Discovery	Microbiome	2025-05-04		Formatting Filtering Principal component plotting Statistical calculation Imputation Heat map generation Clustering Standardisation and normalisation Visualisation Protein quantification	Video Hands-on
Assembly of metagenomic sequencing data	Microbiome	2024-11-26	Metagenomics Sequence assembly	Sequence assembly visualisation Visualisation Sequence alignment analysis Formatting Data handling Genome assembly Sequence contamination filtering Local alignment Statistical calculation Sequence file editing Sequence trimming Sequence composition calculation Sequence assembly validation Read pre-processing Variant calling Read mapping Primer removal Sequencing quality control	Video Hands-on
Clinical Metaproteomics 4: Quantitation	Microbiome	2025-05-04		Principal component plotting Statistical calculation Imputation Heat map generation Clustering Standardisation and normalisation Visualisation Protein quantification	Video Hands-on
Metatranscriptomics analysis using microbiome RNA-seq data	Microbiome	2025-04-07	Metatranscriptomics Microbial ecology Taxonomy Function analysis Sequence analysis	Sequence alignment analysis Validation Phylogenetic inference Sequence composition calculation Phylogenetic tree editing Phylogenetic analysis Species frequency estimation Sequencing quality control Conversion Statistical calculation Sequence comparison Sequence trimming Read pre-processing Primer removal Taxonomic classification Phylogenetic tree visualisation Visualisation Sequence similarity search	Slides Video Hands-on
Metatranscriptomics analysis using microbiome RNA-seq data (short)	Microbiome	2025-04-07	Metatranscriptomics Microbial ecology Taxonomy Function analysis Sequence analysis	Sequence alignment analysis Validation Phylogenetic inference Sequence composition calculation Phylogenetic tree editing Phylogenetic analysis Species frequency estimation Sequencing quality control Conversion Statistical calculation Sequence comparison Sequence trimming Read pre-processing Primer removal Taxonomic classification Phylogenetic tree visualisation Visualisation Sequence similarity search	Video Hands-on
Analyses of metagenomics data - The global picture	Microbiome	2024-08-09	Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding	DNA barcoding Sequence clustering Sequence read processing Phylogenetic analysis Taxonomic classification Sequencing quality control Visualisation	Hands-on
Introduction to Microbiome Analysis	Microbiome	2024-08-08			Slides Video
Mass spectrometry : GC-MS analysis with metaMS package	Metabolomics	2023-11-09		Peak detection Filtering Validation Chromatographic alignment Mass spectrum visualisation Chromatogram visualisation Label-free quantification	Hands-on
Mass spectrometry: LC-MS data processing	Metabolomics	2024-10-15			Hands-on
Mass spectrometry: LC-MS preprocessing with XCMS	Metabolomics	2024-10-15		Peak detection Filtering Validation Chromatographic alignment Mass spectrum visualisation Chromatogram visualisation Label-free quantification	Slides Hands-on
Introduction to Metabolomics	Metabolomics	2023-01-12			Slides
Mass spectrometry imaging: Finding differential analytes	Metabolomics	2023-11-09			Hands-on
Mass spectrometry: LC-MS analysis	Metabolomics	2024-10-15		Peak detection Filtering Validation Chromatographic alignment Mass spectrum visualisation Chromatogram visualisation Label-free quantification	Hands-on
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)	Metabolomics	2023-11-09		Peak detection Formatting Validation Mass spectrum visualisation Clustering Standardisation and normalisation Correlation Format validation Filtering Chromatographic alignment Imputation Chromatogram visualisation Spectral library search Label-free quantification	Hands-on
Predicting EI+ mass spectra with QCxMS	Metabolomics	2024-10-01			Slides Hands-on
Mass spectrometry imaging: Examining the spatial distribution of analytes	Metabolomics	2024-10-15			Hands-on
Finding the muon stopping site with pymuon-suite in Galaxy	Materials Science	2024-06-14			Video Hands-on
Very Short Introductions: QC	Introduction to Galaxy Analyses	2024-06-25		Sequence contamination filtering Sequencing quality control Validation	Hands-on
Galaxy Basics for everyone	Introduction to Galaxy Analyses	2024-12-02		Visualisation	Video Hands-on
Galaxy Basics for genomics	Introduction to Galaxy Analyses	2025-04-22		Mapping	Video Hands-on
A short introduction to Galaxy	Introduction to Galaxy Analyses	2025-03-31		Statistical calculation Sequence composition calculation Sequencing quality control	Slides Video Hands-on
IGV Introduction	Introduction to Galaxy Analyses	2023-02-17			Hands-on
Upload data to Galaxy	Introduction to Galaxy Analyses	2023-11-09			Hands-on
Options for using Galaxy	Introduction to Galaxy Analyses	2022-09-23			Slides Video
Introduction to Galaxy	Introduction to Galaxy Analyses	2025-03-10			Slides
Data Manipulation Olympics	Introduction to Galaxy Analyses	2025-02-07			Hands-on
Introduction to Genomics and Galaxy	Introduction to Galaxy Analyses	2024-10-15			Video Hands-on
How to reproduce published Galaxy analyses	Introduction to Galaxy Analyses	2024-10-15		Visualisation	Hands-on
NGS data logistics	Introduction to Galaxy Analyses	2025-04-14		Data handling Formatting Sequence alignment Validation Genome indexing Sequence contamination filtering Generation Read mapping SNP detection Sequencing quality control	Video Hands-on
From peaks to genes	Introduction to Galaxy Analyses	2025-02-10			Hands-on
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data	Imaging	2025-05-04			Video Hands-on
FAIR Bioimage Metadata	Imaging	2025-05-04			Hands-on
Analyse HeLa fluorescence siRNA screen	Imaging	2024-11-07		Image annotation Data handling Image analysis Visualisation	Hands-on
Object tracking using CellProfiler	Imaging	2024-10-15		Image analysis Parsing Quantification	Hands-on
Using BioImage.IO models for image analysis in Galaxy	Imaging	2025-04-16		Image annotation Data handling Image analysis Visualisation	Hands-on
Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines	Imaging	2025-03-20		Image annotation Data handling Image analysis Visualisation	Hands-on
End-to-End Tissue Microarray Image Analysis with Galaxy-ME	Imaging	2025-03-14			Hands-on
Nucleoli segmentation and feature extraction using CellProfiler	Imaging	2024-10-15		Image analysis Parsing Quantification	Slides Hands-on
Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy	Imaging	2025-04-28		Image annotation Data handling Image analysis Visualisation	Hands-on
Introduction to Image Analysis using Galaxy	Imaging	2025-03-20		Image annotation Data handling Image analysis Visualisation	Hands-on
Tracking of mitochondria and capturing mitoflashes	Imaging	2024-11-20		Image analysis	Hands-on
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy	Imaging	2025-04-08		Image analysis	Hands-on
Genomic Data Visualisation with JBrowse	Visualisation	2024-10-15		Genome visualisation	Slides Hands-on
Microbial Variant Calling	Variant Analysis	2025-03-19	Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Genetic variation	Variant calling Phylogenetic tree generation Phylogenetic tree visualisation Genome visualisation	Hands-on
CRISPR screen analysis	Genome Annotation	2024-08-08		Genetic variation analysis Validation Statistical calculation Sequence trimming Sequence composition calculation Read pre-processing Primer removal Sequencing quality control	Slides Video Hands-on
Long non-coding RNAs (lncRNAs) annotation with FEELnc	Genome Annotation	2024-09-18		RNA-Seq analysis Sequence annotation Classification Annotation Transcriptome assembly	Video Hands-on
Refining Genome Annotations with Apollo (eukaryotes)	Genome Annotation	2025-02-26		Genome visualisation	Hands-on
Functional annotation of protein sequences	Genome Annotation	2024-10-15		Homology-based gene prediction Fold recognition Sequence alignment analysis Query and retrieval Protein feature detection Information extraction Sequence motif recognition Genome annotation	Hands-on
Genome annotation with Maker	Genome Annotation	2024-02-29		Genome assembly Ab-initio gene prediction Scaffolding Operation Sequence assembly validation Homology-based gene prediction Gene prediction Genome annotation Sequence annotation Transcriptome assembly Genome visualisation	Hands-on
Essential genes detection with Transposon insertion sequencing	Genome Annotation	2024-03-18	Genomics Microbiology Sequence analysis Mobile genetic elements	Primer removal Transposon prediction Sequence trimming Read pre-processing	Slides Hands-on
Genome annotation with Maker (short)	Genome Annotation	2024-02-29		Genome visualisation Genome assembly Sequence annotation Scaffolding Sequence assembly validation Transcriptome assembly Genome annotation	Hands-on
Genome annotation with Funannotate	Genome Annotation	2024-10-15		Genome visualisation Formatting Protein feature detection Genome assembly Information extraction Scaffolding Sequence motif recognition Sequence alignment Sequence assembly validation Homology-based gene prediction Fold recognition Query and retrieval Sequence annotation Transcriptome assembly Genome annotation	Video Hands-on
Comparative gene analysis in unannotated genomes	Genome Annotation	2024-03-18	Genomics Gene and protein families Sequence analysis Phylogeny	Database search Phylogenetic tree generation Sequence alignment analysis Multiple sequence alignment De-novo assembly Coding region prediction Transcriptome assembly	Hands-on
Bacterial pangenomics	Genome Annotation	2025-03-14	Genomics Microbiology	Essential dynamics Rarefaction Sequence assembly Genome annotation	Hands-on
Creating an Official Gene Set	Genome Annotation	2024-02-29			Hands-on
Bacterial genome quality control	Genome Annotation	2025-03-14	Genomics Microbiology	Genome comparison Validation Statistical calculation Sequence composition calculation Sequence assembly validation Sequencing quality control	Hands-on
Genome Annotation	Genome Annotation	2024-10-15			Hands-on
Dataset construction for bacterial comparative genomics	Genome Annotation	2025-03-14	Genomics Microbiology	Data retrieval Data handling Sequence database search	Hands-on
Introduction to Genome Annotation	Genome Annotation	2025-04-23			Slides
Bacterial Genome Annotation	Genome Annotation	2024-10-15	Genomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements	Genome visualisation Protein feature detection Genome assembly Nucleic acid feature detection Scaffolding Sequence motif recognition Multilocus sequence typing Structural variation detection Genome annotation	Video Hands-on
Masking repeats with RepeatMasker	Genome Annotation	2024-06-14		RNA-Seq analysis Repeat sequence detection Mapping Editing Genome annotation	Video Hands-on
Refining Genome Annotations with Apollo (prokaryotes)	Genome Annotation	2025-02-26	Genomics Microbiology Gene and protein families Sequence analysis	Genome visualisation	Slides Video Hands-on
Secondary metabolite discovery	Genome Annotation	2024-09-27		Gene prediction Data handling Differential gene expression analysis Service invocation Sequence clustering	Hands-on
Identification of AMR genes in an assembled bacterial genome	Genome Annotation	2024-10-15	Whole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance	Read mapping Genome annotation Antimicrobial resistance prediction Genome visualisation	Video Hands-on
Genome annotation with Helixer	Genome Annotation	2024-12-05		Genome assembly Scaffolding Sequence assembly validation Gene prediction Differential protein expression profiling Genome annotation Sequence annotation Transcriptome assembly Genome visualisation	Hands-on
Genome annotation with Braker3	Genome Annotation	2025-03-17	Sequence assembly Genomics	Genome assembly Sequence alignment Scaffolding Sequence assembly validation Gene prediction Differential protein expression profiling Genome annotation Sequence annotation Transcriptome assembly Genome visualisation	Hands-on
From small to large-scale genome comparison	Genome Annotation	2024-07-31		Multiple sequence alignment	Slides Hands-on
Genome annotation with Prokka	Genome Annotation	2025-03-19	Genomics Microbiology Gene and protein families Sequence analysis	Gene prediction Genome visualisation Coding region prediction Genome annotation	Slides Video Hands-on
Group tags for complex experimental designs	Using Galaxy and Managing your Data	2023-11-09			Hands-on
Extracting Workflows from Histories	Using Galaxy and Managing your Data	2024-12-02			Hands-on
Rule Based Uploader	Using Galaxy and Managing your Data	2024-06-14			Video Hands-on
Understanding Galaxy history system	Using Galaxy and Managing your Data	2025-04-28			Video Hands-on
JupyterLab in Galaxy	Using Galaxy and Managing your Data	2025-04-25			Hands-on
Name tags for following complex histories	Using Galaxy and Managing your Data	2023-11-09			Hands-on
Getting started with Onedata distributed storage	Using Galaxy and Managing your Data	2025-04-08			Hands-on
Onedata user-owned storage	Using Galaxy and Managing your Data	2025-04-08			Hands-on
Importing (uploading) data from Onedata	Using Galaxy and Managing your Data	2025-04-08			Hands-on
Creating high resolution images of Galaxy Workflows	Using Galaxy and Managing your Data	2025-04-08			Hands-on
Using dataset collections	Using Galaxy and Managing your Data	2024-12-05		Generation Read mapping Sequence alignment Genome indexing	Video Hands-on
Exporting to Onedata remote	Using Galaxy and Managing your Data	2025-04-08			Hands-on
RStudio in Galaxy	Using Galaxy and Managing your Data	2025-01-21			Hands-on
Use Jupyter notebooks in Galaxy	Using Galaxy and Managing your Data	2025-04-25			Hands-on
Searching Your History	Using Galaxy and Managing your Data	2023-11-16			Hands-on
Downloading and Deleting Data in Galaxy	Using Galaxy and Managing your Data	2023-11-09			Hands-on
Rule Based Uploader: Advanced	Using Galaxy and Managing your Data	2024-06-14			Video Hands-on
Galaxy workflows in Dockstore	Using Galaxy and Managing your Data	2022-10-27			Slides
Getting data into Galaxy	Using Galaxy and Managing your Data	2022-10-18			Slides
Workflow Reports	Using Galaxy and Managing your Data	2024-06-14		Visualisation	Video Hands-on
Using Workflow Parameters	Using Galaxy and Managing your Data	2024-06-14			Video Hands-on
InterMine integration with Galaxy	Using Galaxy and Managing your Data	2024-02-29			Hands-on
Creating, Editing and Importing Galaxy Workflows	Using Galaxy and Managing your Data	2023-11-09			Hands-on
FAIRification of an RNAseq dataset	FAIR Data, Workflows, and Research	2024-03-27			Hands-on
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data	FAIR Data, Workflows, and Research	2024-10-15			Video Hands-on
Persistent Identifiers	FAIR Data, Workflows, and Research	2024-03-27			Hands-on
Access	FAIR Data, Workflows, and Research	2024-03-27			Hands-on
Submitting workflows to LifeMonitor	FAIR Data, Workflows, and Research	2024-09-26			Hands-on
FAIR Bioimage Metadata	FAIR Data, Workflows, and Research	2024-10-15			Hands-on
Data Registration	FAIR Data, Workflows, and Research	2024-09-27			Hands-on
FAIR Galaxy Training Material	FAIR Data, Workflows, and Research	2024-03-27			Hands-on
Best practices for workflows in GitHub repositories	FAIR Data, Workflows, and Research	2025-04-08			Hands-on
Metadata	FAIR Data, Workflows, and Research	2024-03-27			Hands-on
FAIR data management solutions	FAIR Data, Workflows, and Research	2025-01-16			Hands-on
Exporting Workflow Run RO-Crates from Galaxy	FAIR Data, Workflows, and Research	2024-08-26			Hands-on
RO-Crate in Python	FAIR Data, Workflows, and Research	2025-04-08			Hands-on
DataPLANT ARCs	FAIR Data, Workflows, and Research	2024-12-11			Slides Video Hands-on
Workflow Run RO-Crate Introduction	FAIR Data, Workflows, and Research	2023-05-11			Hands-on
FAIR and its Origins	FAIR Data, Workflows, and Research	2024-03-27			Hands-on
RO-Crate - Introduction	FAIR Data, Workflows, and Research	2025-04-08			Video Hands-on
Making clinical datasets FAIR	FAIR Data, Workflows, and Research	2024-09-13			Video Hands-on
Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub	FAIR Data, Workflows, and Research	2024-09-13			Video Hands-on
Sequence data submission to ENA	FAIR Data, Workflows, and Research	2024-06-25			Hands-on
FAIR in a nutshell	FAIR Data, Workflows, and Research	2024-04-30			Hands-on
An earth-system RO-Crate	FAIR Data, Workflows, and Research	2024-12-02			Slides Video
Data management in Medicinal Chemistry	FAIR Data, Workflows, and Research	2025-05-04			Video Hands-on
Phylogenetics - Back to Basics - Phylogenetic Networks	Evolution	2024-05-10			Slides
Phylogenetics - Back to Basics - Estimating trees from alignments	Evolution	2024-05-10			Slides
Phylogenetics - Back to Basics - Building Trees	Evolution	2024-05-10			Slides
Phylogenetics - Back to Basics - Multiple Sequence Alignment	Evolution	2024-05-10			Slides
Phylogenetics - Back to Basics - Terminology	Evolution	2024-05-10			Slides
Phylogenetic analysis for bacterial comparative genomics	Evolution	2025-03-14	Genomics Microbiology Phylogeny	Phylogenetic tree generation (from molecular sequences) Phylogenetic tree generation (maximum likelihood and Bayesian methods)	Hands-on
Phylogenetics - Back to Basics - Introduction	Evolution	2024-05-10			Slides
Identifying tuberculosis transmission links: from SNPs to transmission clusters	Evolution	2024-07-12	Genomics Microbiology Infectious disease DNA polymorphism	Variant calling Phylogenetic tree generation Phylogenetic tree visualisation Antimicrobial resistance prediction	Hands-on
Tree thinking for tuberculosis evolution and epidemiology	Evolution	2024-03-12	Genomics Microbiology Phylogeny Infectious disease	Sequence analysis Phylogenetic tree analysis	Hands-on
Phylogenetics - Back to basics	Evolution	2024-05-10		Phylogenetic tree generation (from molecular sequences) Phylogenetic tree generation Multiple sequence alignment Sequence analysis Phylogenetic tree analysis Phylogenetic analysis Phylogenetic tree generation (maximum likelihood and Bayesian methods) Phylogenetic tree reconstruction	Hands-on
Introduction to ChIP-Seq data analysis	Epigenetics	2024-03-05			Slides
Introduction to DNA Methylation data analysis	Epigenetics	2024-03-05			Slides
DNA Methylation data analysis	Epigenetics	2025-04-03	Epigenomics	Visualisation Read mapping Statistical calculation Sequence composition calculation Sequencing quality control	Hands-on
Infinium Human Methylation BeadChip	Epigenetics	2024-10-15			Slides Hands-on
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)	Epigenetics	2025-04-08	ChIP-seq	Gene regulatory network analysis Sequence alignment Genome indexing Enrichment analysis Statistical calculation Sequence composition calculation Peak calling Generation Read mapping Mapping Sequencing quality control	Hands-on
Identification of the binding sites of the Estrogen receptor	Epigenetics	2025-04-08		Gene regulatory network analysis Enrichment analysis Statistical calculation Sequence trimming Sequence composition calculation Peak calling Read pre-processing Read mapping Primer removal Sequencing quality control	Hands-on
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer	Epigenetics	2024-10-15		Generation Read mapping Sequence alignment Genome indexing	Hands-on
CUT&RUN data analysis	Epigenetics	2025-03-19		Visualisation Sequence alignment analysis Data handling Gene regulatory network analysis Formatting Enrichment analysis Validation Sequence trimming Peak calling Read mapping Primer removal Mapping Sequencing quality control Read pre-processing	Hands-on
ATAC-Seq data analysis	Epigenetics	2024-08-08		Sequence alignment analysis Formatting Data handling Gene regulatory network analysis Enrichment analysis Statistical calculation Sequence trimming Sequence composition calculation Peak calling Read pre-processing Read mapping Primer removal Mapping Sequencing quality control Visualisation	Slides Video Hands-on
Formation of the Super-Structures on the Inactive X	Epigenetics	2025-04-08		Gene regulatory network analysis Enrichment analysis Statistical calculation Sequence trimming Sequence composition calculation Peak calling Read pre-processing Read mapping Structure visualisation Primer removal Mapping Sequencing quality control Pathway visualisation Genome visualisation	Slides Hands-on
Regulations/standards for AI using DOME	Statistics and machine learning	2025-04-17			Slides Hands-on
Deep Learning (without Generative Artificial Intelligence) using Python	Statistics and machine learning	2025-03-11			Slides Hands-on
Neural networks using Python	Statistics and machine learning	2025-03-11			Slides Hands-on
Foundational Aspects of Machine Learning using Python	Statistics and machine learning	2025-04-30			Hands-on
Train-the-Trainer: putting it all together	Teaching and Hosting Galaxy training	2025-03-11			Hands-on
Assessment and feedback in training and teachings	Teaching and Hosting Galaxy training	2025-03-11			Hands-on
Training techniques to enhance learner participation and engagement	Teaching and Hosting Galaxy training	2025-03-11			Hands-on
Motivation and Demotivation	Teaching and Hosting Galaxy training	2025-03-11			Hands-on
Visualize EBV cube data with Panoply netCDF viewer	Ecology	2024-06-27			Hands-on
Cleaning GBIF data using OpenRefine	Ecology	2025-04-10			Hands-on
QGIS Web Feature Services	Ecology	2024-06-29			Hands-on
Cleaning GBIF data for the use in Ecology	Ecology	2024-06-27			Hands-on
RAD-Seq Reference-based data analysis	Ecology	2025-03-20		Data handling Sequence alignment Validation Genome indexing Statistical calculation Sequence composition calculation Generation Read mapping Sequencing quality control	Hands-on
Champs blocs indicators	Ecology	2024-09-19			Hands-on
Ecoregionalization workflow tutorial	Ecology	2025-01-10			Hands-on
Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS	Ecology	2024-12-06			Hands-on
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities	Ecology	2024-09-10			Hands-on
Regional GAM	Ecology	2024-06-27	Ecology	Visualisation	Hands-on
Visualization of Climate Data using NetCDF xarray Map Plotting	Ecology	2024-06-27			Hands-on
Preparing genomic data for phylogeny reconstruction	Ecology	2024-06-27		Genetic variation analysis Genome assembly Scaffolding Sequence assembly validation Sequence analysis Sequence clustering Multiple sequence alignment Transcriptome assembly Genome annotation	Hands-on
Species distribution modeling	Ecology	2024-06-27			Hands-on
Sentinel 2 biodiversity	Ecology	2024-06-27			Hands-on
Obis marine indicators	Ecology	2024-06-27			Hands-on
Checking expected species and contamination in bacterial isolate	Ecology	2024-06-27	Whole genome sequencing Genomics Microbiology Microbial ecology	Statistical calculation Taxonomic classification Cross-assembly Expression analysis	Hands-on
Compute and analyze biodiversity metrics with PAMPA toolsuite	Ecology	2024-06-27			Video Hands-on
Biodiversity data exploration	Ecology	2024-06-27			Video Hands-on
From NDVI data with OpenEO to time series visualisation with Holoviews	Ecology	2024-06-29			Hands-on
RAD-Seq de-novo data analysis	Ecology	2025-03-20		Data handling Statistical calculation Sequence composition calculation Sequencing quality control	Hands-on
RAD-Seq to construct genetic maps	Ecology	2024-06-27		Data handling	Hands-on
Marine Omics identifying biosynthetic gene clusters	Ecology	2024-09-16		Sequence motif recognition Protein feature detection Genome annotation	Hands-on
Metabarcoding/eDNA through Obitools	Ecology	2024-06-27		Statistical calculation Sequence composition calculation Sequence analysis Sequencing quality control	Video Hands-on
Data submission using ENA upload Tool	Ecology	2025-03-20		Visualisation Read mapping Primer removal Validation Sequence trimming Sequencing quality control Read pre-processing	Hands-on
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry	Development in Galaxy	2024-11-06			Hands-on
Contributing to BioBlend as a developer	Development in Galaxy	2023-11-09			Hands-on
Debugging Galaxy	Development in Galaxy	2024-06-14			Hands-on
Writing Automated Tests for Galaxy	Development in Galaxy	2024-06-25			Hands-on
Contributing a New Feature to Galaxy Core	Development in Galaxy	2025-03-14			Hands-on
ToolFactory: Generating Tools From More Complex Scripts	Development in Galaxy	2024-09-27			Video Hands-on
Data source integration	Development in Galaxy	2022-10-18			Hands-on
Creating Galaxy tools from Conda Through Deployment	Development in Galaxy	2024-10-08			Video Hands-on
Galaxy Interactive Tools	Development in Galaxy	2024-12-03			Hands-on
Setting up a dev Onedata instance	Development in Galaxy	2025-04-08			Hands-on
Tool Dependencies and Conda	Development in Galaxy	2023-04-14			Slides
Tool development and integration into Galaxy	Development in Galaxy	2025-04-08			Slides Hands-on
Galaxy Interactive Tours	Development in Galaxy	2021-07-27			Slides
Galaxy Interactive Environments	Development in Galaxy	2023-02-17			Slides
Generic plugins	Development in Galaxy	2023-11-09			Slides Hands-on
Tool Dependencies and Containers	Development in Galaxy	2022-10-18			Slides
JavaScript plugins	Development in Galaxy	2025-04-08			Slides Hands-on
Galaxy Webhooks	Development in Galaxy	2025-04-08			Slides Hands-on
Scripting Galaxy using the API and BioBlend	Development in Galaxy	2023-11-16			Slides Video Hands-on
Galaxy Code Architecture	Development in Galaxy	2024-06-14			Slides
Prerequisites for building software/conda packages	Development in Galaxy	2021-05-28			Slides
ToolFactory: Generating Tools From Simple Scripts	Development in Galaxy	2024-06-14			Slides Video Hands-on
Tool Shed: sharing Galaxy tools	Development in Galaxy	2022-10-18			Slides
Python - Multiprocessing	Foundations of Data Science	2023-11-16			Hands-on
Python - Coding Style	Foundations of Data Science	2023-05-18			Hands-on
Python - Subprocess	Foundations of Data Science	2023-02-13			Hands-on
Python - Globbing	Foundations of Data Science	2023-02-13			Hands-on
Conda Environments For Software Development	Foundations of Data Science	2023-05-18			Hands-on
Python - Argparse	Foundations of Data Science	2023-01-24			Hands-on
Python - Type annotations	Foundations of Data Science	2023-02-13			Hands-on
Virtual Environments For Software Development	Foundations of Data Science	2023-05-18			Hands-on
Python - Testing	Foundations of Data Science	2023-02-13			Hands-on
Python - Introductory Graduation	Foundations of Data Science	2023-02-13			Hands-on
Python - Try & Except	Foundations of Data Science	2023-02-13			Hands-on
Versioning your code and data with git	Foundations of Data Science	2024-03-12			Hands-on
Python - Files & CSV	Foundations of Data Science	2023-02-13			Hands-on
Python - Loops	Foundations of Data Science	2023-02-13			Hands-on
Data manipulation with Pandas	Foundations of Data Science	2025-02-27			Hands-on
Python - Flow Control	Foundations of Data Science	2023-02-13			Hands-on
Introduction to sequencing with Python (part four)	Foundations of Data Science	2024-02-20			Hands-on
Introduction to sequencing with Python (part three)	Foundations of Data Science	2024-02-20			Hands-on
Data Manipulation Olympics - JQ	Foundations of Data Science	2024-05-07			Hands-on
Python - Lists & Strings & Dictionaries	Foundations of Data Science	2024-06-25			Hands-on
Data Manipulation Olympics - SQL	Foundations of Data Science	2024-05-07			Hands-on
Python - Basic Types & Type Conversion	Foundations of Data Science	2023-02-13			Hands-on
Plotting in Python	Foundations of Data Science	2024-10-15			Hands-on
dplyr & tidyverse for data processing	Foundations of Data Science	2024-10-15			Hands-on
Introduction to sequencing with Python (part two)	Foundations of Data Science	2024-02-20			Hands-on
Introduction to sequencing with Python (part one)	Foundations of Data Science	2024-02-20			Hands-on
Advanced R in Galaxy	Foundations of Data Science	2024-10-15			Video Hands-on
Python - Functions	Foundations of Data Science	2023-02-13			Hands-on
Data visualisation Olympics - Visualization in R	Foundations of Data Science	2024-05-07			Hands-on
Advanced Python	Foundations of Data Science	2024-10-15			Hands-on
Introduction to SQL	Foundations of Data Science	2024-12-13			Hands-on
Basics of using Git from the Command Line	Foundations of Data Science	2023-11-16			Hands-on
CLI Educational Game - Bashcrawl	Foundations of Data Science	2024-10-15			Hands-on
Make & Snakemake	Foundations of Data Science	2024-06-11			Hands-on
R basics in Galaxy	Foundations of Data Science	2024-06-14			Video Hands-on
Python - Math	Foundations of Data Science	2023-02-13			Hands-on
SQL Educational Game - Murder Mystery	Foundations of Data Science	2023-11-23			Hands-on
Advanced SQL	Foundations of Data Science	2024-12-13			Hands-on
Version Control with Git	Foundations of Data Science	2023-10-23			Hands-on
CLI basics	Foundations of Data Science	2024-10-15			Hands-on
SQL with Python	Foundations of Data Science	2023-11-16			Hands-on
SQL with R	Foundations of Data Science	2023-11-16			Hands-on
One protein along the UniProt page	Foundations of Data Science	2024-12-05			Hands-on
Python - Warm-up for statistics and machine learning	Foundations of Data Science	2025-03-11			Hands-on
Introduction to Python	Foundations of Data Science	2024-10-15			Hands-on
Advanced CLI in Galaxy	Foundations of Data Science	2024-10-15			Hands-on
Variant Calling Workflow	Foundations of Data Science	2023-10-23			Hands-on
Learning about one gene across biological resources and formats	Foundations of Data Science	2023-11-09			Slides Video Hands-on
A (very) brief history of genomics	Foundations of Data Science	2024-02-20			Slides Hands-on
Data Manipulation Olympics	Foundations of Data Science	2025-05-04			Hands-on
SARS-CoV-2 Viral Sample Alignment and Variant Visualization	Sequence analysis	2024-02-29		Generation Read mapping Sequence alignment Genome indexing Statistical calculation Sequence composition calculation Sequencing quality control Genome visualisation	Hands-on
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis	Using Galaxy and Managing your Data	2024-06-14		Data handling SNP detection	Slides Video Hands-on
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis	Variant Analysis	2024-06-14		Data handling Formatting Sequence alignment Validation Genome indexing Sequence contamination filtering Generation Read mapping SNP detection Sequencing quality control	Video Hands-on
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data	Variant Analysis	2025-03-28		Methylation analysis Variant calling Tree-based sequence alignment Variant classification	Video Hands-on
Automating Galaxy workflows using the command line	Using Galaxy and Managing your Data	2025-04-08		Tree-based sequence alignment Variant classification	Video Hands-on
Submitting sequence data to ENA	Using Galaxy and Managing your Data	2024-12-11			Slides Hands-on
Removal of human reads from SARS-CoV-2 sequencing data	Sequence analysis	2023-11-09		Generation Read mapping Data handling Sequence alignment Genome indexing Sequence file editing	Hands-on
Updating tool versions in a tutorial	Contributing to the Galaxy Training Material	2024-11-29			Hands-on
Creating Slides	Contributing to the Galaxy Training Material	2024-11-08			Slides Video
Creating content in Markdown	Contributing to the Galaxy Training Material	2025-04-08		Sequencing quality control Validation	Hands-on
Single Cell Publication - Data Analysis	Contributing to the Galaxy Training Material	2024-11-07			Hands-on
Single Cell Publication - Data Plotting	Contributing to the Galaxy Training Material	2024-11-07			Hands-on
FAIR Galaxy Training Material	Contributing to the Galaxy Training Material	2025-05-04			Hands-on
Creating a new tutorial	Contributing to the Galaxy Training Material	2025-03-14		Read mapping Data handling Primer removal Sequence file editing Sequence trimming Read pre-processing	Video Hands-on
GTN Metadata	Contributing to the Galaxy Training Material	2024-10-15			Hands-on
Adding auto-generated video to your slides	Contributing to the Galaxy Training Material	2023-11-09			Hands-on
Preview the GTN website as you edit your training material	Contributing to the Galaxy Training Material	2025-04-08			Video Hands-on
FAIR-by-Design methodology	Contributing to the Galaxy Training Material	2024-10-17			Hands-on
Including a new topic	Contributing to the Galaxy Training Material	2025-03-14			Hands-on
Generating PDF artefacts of the website	Contributing to the Galaxy Training Material	2023-11-09			Hands-on
Principles of learning and how they apply to training and teaching	Contributing to the Galaxy Training Material	2025-03-11			Hands-on
Creating Interactive Galaxy Tours	Contributing to the Galaxy Training Material	2025-04-08			Hands-on
Teaching Python	Contributing to the Galaxy Training Material	2023-11-23			Hands-on
Contributing with GitHub via its interface	Contributing to the Galaxy Training Material	2023-11-09			Hands-on
Adding Quizzes to your Tutorial	Contributing to the Galaxy Training Material	2022-10-18			Hands-on
Tools, Data, and Workflows for tutorials	Contributing to the Galaxy Training Material	2025-04-08			Hands-on
Updating diffs in admin training	Contributing to the Galaxy Training Material	2023-11-23			Hands-on
Design and plan session, course, materials	Contributing to the Galaxy Training Material	2025-03-11			Hands-on
Contributing to the Galaxy Training Network with GitHub	Contributing to the Galaxy Training Material	2025-03-14			Slides Hands-on
Overview of the Galaxy Training Material	Contributing to the Galaxy Training Material	2025-03-14			Slides
Setting up molecular systems	Computational chemistry	2023-11-09			Hands-on
Analysis of molecular dynamics simulations	Computational chemistry	2023-11-09			Hands-on
Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring	Computational chemistry	2023-11-09			Hands-on
Running molecular dynamics simulations using NAMD	Computational chemistry	2023-11-09			Hands-on
High Throughput Molecular Dynamics and Analysis	Computational chemistry	2025-04-08			Video Hands-on
Protein-ligand docking	Computational chemistry	2023-11-09			Hands-on
Running molecular dynamics simulations using GROMACS	Computational chemistry	2023-11-09			Hands-on
Data management in Medicinal Chemistry	Computational chemistry	2024-09-13			Video Hands-on
Protein target prediction of a bioactive ligand with Align-it and ePharmaLib	Computational chemistry	2024-06-14			Hands-on
Creating a Special Interest Group	Galaxy Community Building	2024-12-20			Hands-on
What's a Special Interest Group?	Galaxy Community Building	2024-12-20			Hands-on
Creating community content	Galaxy Community Building	2024-12-20			Hands-on
Creation of an interactive Galaxy tools table for your community	Galaxy Community Building	2024-12-20			Hands-on
Make your tools available on your subdomain	Galaxy Community Building	2024-12-20			Hands-on
Visualize Climate data with Panoply netCDF viewer	Climate	2023-11-09			Hands-on
Getting your hands-on earth data	Climate	2024-10-04			Hands-on
Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab	Climate	2023-12-05			Hands-on
Ocean Data View (ODV)	Climate	2023-11-27			Hands-on
Collaboration with JupyterGIS	Climate	2025-04-04			Hands-on
Introduction to climate data	Climate	2023-01-12			Slides Video
Functionally Assembled Terrestrial Ecosystem Simulator (FATES)	Climate	2024-08-08		Visualisation	Slides Video Hands-on
Getting your hands-on climate data	Climate	2024-06-11		Visualisation	Hands-on
Ocean's variables study	Climate	2024-08-09			Hands-on
Sentinel 5P data visualisation	Climate	2024-01-26			Hands-on
Pangeo Notebook in Galaxy - Introduction to Xarray	Climate	2024-06-14			Slides Video Hands-on
Analyse Argo data	Climate	2024-03-24			Hands-on
Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools	Climate	2024-06-14		Visualisation	Slides Video Hands-on
An introduction to get started in genome assembly and annotation	Assembly	2023-10-23			Slides
Genome assembly and assembly QC - Introduction short version	Assembly	2025-04-23			Slides
Deeper look into Genome Assembly algorithms	Assembly	2021-01-12			Slides
Large genome assembly and polishing	Assembly	2025-03-28		Sequence assembly visualisation Genome assembly Validation Scaffolding Scatter plot plotting Sequence contamination filtering Sequence composition calculation Mapping assembly Variant calling Pairwise sequence alignment De-novo assembly Cross-assembly Sequencing quality control Transcriptome assembly Statistical calculation Sequence assembly validation Box-Whisker plot plotting Sequence assembly Base-calling Visualisation	Video Hands-on
Unicycler Assembly	Assembly	2024-03-13	Sequence assembly Genomics Microbiology	Visualisation Genome assembly Validation Aggregation Statistical calculation Sequence composition calculation Sequence assembly validation Gene prediction Coding region prediction Sequencing quality control Genome annotation	Slides Hands-on
De Bruijn Graph Assembly	Assembly	2024-02-01		Sequence assembly Genome assembly Optimisation and refinement	Slides Hands-on
Genome assembly using PacBio data	Assembly	2025-04-23		Cross-assembly Genome assembly Scaffolding Sequence assembly validation Mapping assembly De-novo assembly Visualisation Transcriptome assembly	Hands-on
Genome Assembly Quality Control	Assembly	2023-11-09		Genome assembly Scaffolding Sequence assembly validation Phasing k-mer counting De-novo assembly Visualisation Transcriptome assembly	Slides Hands-on
Making sense of a newly assembled genome	Assembly	2024-06-24	Sequence assembly Genomics Microbiology	Read mapping Sequence alignment Mapping Sequence visualisation Genome visualisation	Hands-on
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads	Assembly	2024-06-14		Sequence assembly visualisation Data handling Sequence contamination filtering Validation Scatter plot plotting Genome assembly Aggregation Sequence file editing Box-Whisker plot plotting Read mapping Pairwise sequence alignment Sequencing quality control	Slides Video Hands-on
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data	Assembly	2025-03-20	Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology	Sequence assembly visualisation Genome assembly Sequence contamination filtering Statistical calculation Sequence composition calculation Sequence assembly validation Read mapping Sequencing quality control Visualisation	Video Hands-on
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step	Assembly	2024-12-11		Data handling Read binning Genome assembly Sequence alignment Scaffolding Sequence trimming Sequence assembly validation Phasing Read pre-processing k-mer counting Primer removal De-novo assembly Pairwise sequence alignment Mapping Visualisation Transcriptome assembly	Video Hands-on
Chloroplast genome assembly	Assembly	2025-03-19		Sequence assembly visualisation Genome visualisation Cross-assembly Analysis Sequence alignment Genome indexing Scatter plot plotting Genome assembly Box-Whisker plot plotting Mapping assembly Generation Read mapping Gene prediction De-novo assembly Sequence assembly Read alignment Coding region prediction Genome annotation	Video Hands-on
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data	Assembly	2024-10-08		Sequence assembly validation Visualisation	Video Hands-on
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)	Assembly	2024-11-29	Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance	Sequence assembly visualisation Sequence alignment Sequence contamination filtering Scatter plot plotting Genome assembly Sequence composition calculation Mapping assembly Cross-assembly Sequencing quality control Filtering Sequencing error detection Statistical calculation Sequence assembly validation Box-Whisker plot plotting Read mapping De-novo assembly Visualisation	Hands-on
Decontamination of a genome assembly	Assembly	2024-11-07		Data handling Taxonomic classification	Video Hands-on
ERGA post-assembly QC	Assembly	2024-10-08		Sequence assembly visualisation Genotyping Sequence alignment analysis Data handling Genome assembly Sequence alignment Scaffolding Sequence trimming Sequence assembly validation Phasing k-mer counting Pairwise sequence alignment De-novo assembly Transcriptome assembly	Video Hands-on
Assembly of metagenomic sequencing data	Assembly	2025-05-04	Metagenomics Sequence assembly	Sequence assembly visualisation Visualisation Sequence alignment analysis Formatting Data handling Genome assembly Sequence contamination filtering Local alignment Statistical calculation Sequence file editing Sequence trimming Sequence composition calculation Sequence assembly validation Read pre-processing Variant calling Read mapping Primer removal Sequencing quality control	Video Hands-on
Assembly of the mitochondrial genome from PacBio HiFi reads	Assembly	2024-09-26			Video Hands-on
An Introduction to Genome Assembly	Assembly	2024-09-12		Visualisation Statistical calculation Formatting Validation De-novo assembly Sequence composition calculation Sequence assembly validation Sequencing quality control	Slides Video Hands-on
Welcome to the BioImage Model Zoo	Image analysis using Deep Learning	2023-05-18			Slides Video
Contribute to the BioImage.IO models	Image analysis using Deep Learning	2023-05-24			Slides Video
BioImage Model Zoo: Advanced models in one-click	Image analysis using Deep Learning	2023-05-24			Slides Video
Deploying a compute cluster in OpenStack via Terraform	Galaxy Server administration	2024-12-19			Slides Hands-on
Deploying Tailscale/Headscale for private mesh networking	Galaxy Server administration	2024-12-19	Data security Software engineering		Hands-on
Deploying Wireguard for private mesh networking	Galaxy Server administration	2024-12-19			Hands-on
Pulsar usage on SURF Research Cloud	Galaxy Server administration	2024-12-19	Informatics Data management		Hands-on
Galaxy usage on SURF Research Cloud	Galaxy Server administration	2024-12-19	Informatics Data management		Hands-on
Managing Galaxy on Kubernetes	Galaxy Server administration	2024-12-19			Hands-on
Galaxy Installation on Kubernetes	Galaxy Server administration	2024-06-30			Hands-on
Training Infrastructure as a Service (TIaaS)	Galaxy Server administration	2024-12-18			Video Hands-on
Deploying a Beacon v1 in Galaxy	Galaxy Server administration	2024-12-18			Hands-on
Create a subdomain for your community on UseGalaxy.eu	Galaxy Server administration	2024-12-13			Hands-on
Alternative Celery Deployment for Galaxy	Galaxy Server administration	2024-11-07			Hands-on
Use Apptainer containers for running Galaxy jobs	Galaxy Server administration	2025-04-08			Video Hands-on
Galaxy Database schema	Galaxy Server administration	2025-04-08			Hands-on
Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD)	Galaxy Server administration	2025-04-08			Hands-on
Monitoring Galaxy and Pulsar with Sentry	Galaxy Server administration	2024-03-18			Hands-on
Customizing the look of Galaxy (Manual)	Galaxy Server administration	2025-04-08			Hands-on
Automation with Jenkins	Galaxy Server administration	2022-10-18			Hands-on
Mapping Jobs to Destinations using TPV	Galaxy Server administration	2024-06-14			Video Hands-on
Upgrading Galaxy	Galaxy Server administration	2024-11-25			Video Hands-on
How I learned to stop worrying and love the systemd	Galaxy Server administration	2023-09-28			Hands-on
Galaxy Monitoring with Reports	Galaxy Server administration	2025-04-08			Hands-on
Customizing the look of Galaxy	Galaxy Server administration	2025-04-08			Hands-on
Adding file-sources to Galaxy	Galaxy Server administration	2025-01-20			Hands-on
Enable upload via FTP	Galaxy Server administration	2024-02-20			Hands-on
Performant Uploads with TUS	Galaxy Server administration	2024-06-14			Video Hands-on
Reference Data with CVMFS without Ansible	Galaxy Server administration	2023-11-23			Hands-on
Setting up Celery Workers for Galaxy	Galaxy Server administration	2025-04-08			Slides Hands-on
Running Jobs on Remote Resources with Pulsar	Galaxy Server administration	2025-04-08			Slides Video Hands-on
Ansible	Galaxy Server administration	2024-08-08			Slides Video Hands-on
Connecting Galaxy to a compute cluster	Galaxy Server administration	2025-04-08			Slides Video Hands-on
Galaxy Tool Management with Ephemeris	Galaxy Server administration	2025-04-03			Slides Video Hands-on
Data Libraries	Galaxy Server administration	2024-06-14			Slides Video Hands-on
Galaxy Monitoring	Galaxy Server administration	2022-03-01			Slides
Galaxy Administrator Time Burden and Technology Usage	Galaxy Server administration	2024-07-10			Slides
Galaxy Monitoring with Telegraf and Grafana	Galaxy Server administration	2024-12-18			Slides Video Hands-on
Docker and Galaxy	Galaxy Server administration	2022-10-18			Slides
Galaxy Troubleshooting	Galaxy Server administration	2024-06-25			Slides
Distributed Object Storage	Galaxy Server administration	2025-03-24			Slides Video Hands-on
Empathy	Galaxy Server administration	2021-04-06			Slides
Reference Data with CVMFS	Galaxy Server administration	2025-04-03			Slides Video Hands-on
Galaxy Installation with Ansible	Galaxy Server administration	2025-04-08	Database management Informatics Data management		Slides Video Hands-on
Galaxy from an administrator's point of view	Galaxy Server administration	2024-06-25			Slides
Server: Other	Galaxy Server administration	2023-02-17			Slides
External Authentication	Galaxy Server administration	2022-10-18			Slides Hands-on
Controlling Galaxy with systemd or Supervisor	Galaxy Server administration	2023-04-16			Slides Video
Advanced customisation of a Galaxy instance	Galaxy Server administration	2023-04-17			Slides
Galaxy Monitoring with gxadmin	Galaxy Server administration	2024-08-08			Slides Video Hands-on
Galactic Database	Galaxy Server administration	2022-06-16			Slides Video
Reference Data with Data Managers	Galaxy Server administration	2023-04-21		Generation Read mapping Sequence alignment Genome indexing	Slides Hands-on
Gearing towards production	Galaxy Server administration	2025-04-08			Slides Video
Server Maintenance: Cleanup, Backup, and Restoration	Galaxy Server administration	2024-08-09	Database management Informatics Data management		Slides Video Hands-on
uWSGI	Galaxy Server administration	2022-03-01			Slides
User, Role, Group, Quota, and Authentication managment	Galaxy Server administration	2024-08-08			Slides Video
Galaxy Interactive Tools	Galaxy Server administration	2025-04-08			Slides Video Hands-on
Galaxy on the Cloud	Galaxy Server administration	2024-12-19			Slides